Laboratory of Biosensors and Bioinstruments

Selected peer-reviewed  publications



A. Aitkulov, M. Sypabekova, C. Molardi, W. Blanc, D. Tosi, “Fabrication and performance evaluation of reflectorless refractive index fiber optic sensors using etched enhanced backscattering fibers,” Measurement, vol. 172, 108874, 2021

D. Tosi, C. Molardi, W. Blanc, “Rayleigh scattering characterization of a low-loss MgO-based nanoparticle-doped optical fiber for distributed sensing,” Optics & Laser Technology, vol. 133, 106523, 2021.

M. Shaimerdenova, T. Ayupova, M. Sypabekova, D. Tosi, “Fiber optic refractive index sensors based on a ball resonator and optical backscatter interrogation,” Sensors, vol. 20, no. 21, 6199, 2020.

D. Lo Presti, C. Massaroni, C. Leitao, M. F. Domingues, M. Sypabekova, D. Barrera, I. Floris, L. Massari, C. M. Oddo, S. Sales, I. Iordachita, D. Tosi, E. Schena, “Fiber Bragg Grating sensors: medical applications and future challenges,” IEEE Access, vol. 8, pp. 156863-156888, 2020.

A. Bekmurzayeva, K. Dukenbayev, H. S. Azevedo, E. Marsili, D. Tosi, D. Kanayeva, “Optimizing silanization to functionalize stainless steel wire: towards breast cancer stem cell isolation,” Materials, vol. 13, 3693, 2020.

Z. Ashikbayeva, A. Aitkulov, M. Jelbuldina, A. Issatayeva, A. Beisenova, C. Molardi, P. Saccomandi, W. Blanc, V. Inglezakis, D. Tosi, “Distributed 2D temperature sensing during nanoparticles assisted laser ablation by means of high-scattering fiber sensors,” Scientific Reports, vol. 10, 12593, 2020.

C. Molardi, W. Blanc, D. Tosi, “Fiber loop resonator sensor achieved by high-scattering MgO nanoparticle-doped fibers,” Optical Materials: X, vol. 7, 100057, 2020.

M. Sypabekova, A. Aitkulov, W. Blanc, D. Tosi, “Reflector-less Nanoparticles Doped Optical Fiber Biosensor for the Detection of Proteins: Case Thrombin,” Biosensors and Bioelectronics, vol. 165, 112365, 2020.

A. Issatayeva, A. Beisenova, D. Tosi, C. Molardi, “Fiber-optic smart textiles for real-time monitoring of breathing rate,” Sensors, vol. 20, 3408, 2020.

D. Tosi, C. Molardi, W. Blanc, T. Paixao, P. Antunes, C. Marques, “Performance analysis of scattering-level multiplexing (SLMux) in distributed fiber-optic backscatter reflectometry physical sensors,” Sensors, vol. 20, 2595, 2020.

T. Paixão, L. Pereira, R. Min, W. Blanc, D. Tosi, C. Molardi, C. Marques, P. Antunes, “Bragg gratings and Fabry-Perot interferometers on an Er-MgO-doped optical fiber,” Optics & Laser Technology, vol. 123, 105946, 2020.


Pachva, M.C., Kisselev, A.F., Matkarimov, B.T., Saparbaev, M., Groisman, R., “DNA-Histone Cross-Links: Formation and Repair”, Frontiers in Cell and Developmental Biology, 2020, 8, 607045

Matta, E., Kiribayeva, A., Khassenov, B., Matkarimov, B.T., Ishchenko, A.A., “Insight into DNA substrate specificity of PARP1-catalysed DNA poly(ADP-ribosyl)ation”, Scientific Reports, 2020, 10(1), 3699

Yurchenko, A.A., Padioleau, I., Matkarimov, B.T., ...Sarasin, A., Nikolaev, S., “XPC deficiency increases risk of hematologic malignancies through mutator phenotype and characteristic mutational signature”, Nature Communications, 2020, 11(1), 5834

AV Popov, IR Grin, AP Dvornikova, BT Matkarimov, R Groisman et al., “Reading Targeted DNA Damage in the Active Demethylation Pathway: Role of Accessory Domains of Eukaryotic AP Endonucleases and Thymine-DNA Glycosylases”, Journal of Molecular Biology, 2020, 432(6), стр. 1747–1768

Matkarimov, B.T., Zharkov, D.O., Saparbaev, M.K., “Mechanistic insight into the role of Poly(ADP-ribosyl)ation in DNA topology modulation and response to DNA damage”, Mutagenesis, 2020, 35(1), стр. 107–118

Matkarimov, B.T., Saparbaev, M.K., “DNA Repair and Mutagenesis in Vertebrate Mitochondria: Evidence for Asymmetric DNA Strand Inheritance”, Advances in Experimental Medicine and Biology, 2020, 1241, стр. 77–100

BT Matkarimov, E Matta, A Kiribayeva, B Khassenov, AA Ishchenko, “Insight into DNA substrate specificity of PARP1-catalysed DNA poly (ADP-ribosyl) ation”, Scientific reports, 2020, 10 (1), 1-11

Y Baiken, D Kanayeva, S Taipakova, R Groisman, A ISHCHENKO et al., “Role of base excision repair pathway in the processing of complex DNA damage generated by oxidative stress and anticancer drugs”, Frontiers in Cell and Developmental Biology 8, 1807

Bakhyt T Matkarimov, Dmitry O Zharkov, Murat K Saparbaev, “Mechanistic insight into the role of Poly (ADP-ribosyl) ation in DNA topology modulation and response to DNA damage”, Mutagenesis 2020, 35 (1), 107-118

Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Bakhyt T Matkarimov, ...Tudek, B., Saparbaev, M., “Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1”, DNA Repair, 2019, 82, 102698


Saliev, T., Begimbetova, D., Masoud, A.-R., Matkarimov, B., “Biological effects of non-ionizing electromagnetic fields: Two sides of a coin”, Progress in Biophysics and Molecular Biology, 2019, 141, стр. 25–36

Glyakina, A.V., Strizhov, N.I., Karpov, M.V., ...Donova, M.V., Galzitskaya, O.V., “Ile351, Leu355 and Ile461 residues are essential for catalytic activity of bovine cytochrome P450scc (CYP11A1)”, Steroids, 2019, 143, стр. 80–90

T. Ayupova, M. Shaimerdenova, S. Korganbayev, M. Sypabekova, A. Bekmurzayeva, W. Blanc, S. Sales, T. Guo, C. Molardi, D. Tosi, “Fiber Optic Reflector-Less Refractive Index Distributed Multi-Sensors by Scattering-Level Multiplexing with MgO Nanoparticle-Doped Fibers,” IEEE Sensors Journal, vol. 20, no. 5, pp. 2504-2510, 2019.

M. Sypabekova, S. Korganbayev, A. Gonzalez-Vila, C. Caucheteur, M. Shaimerdenova, T. Ayupova, A. Bekmurzayeva, L. Vangelista, D. Tosi, “Functionalized Etched Tilted Fiber Bragg Grating Aptasensor for Label-Free Protein Detection,” Biosensors and Bioelectronics, vol. 146, 111765, 2019.

Z. Ashikbayeva, D. Tosi, D. Balmassov, E. Schena, P. Saccomandi, V. Inglezakis, “Application of nanoparticles and nanomaterials in thermal ablation therapy of cancer tumor,” Nanomaterials, vol. 9, no. 9, 1195, 2019.

C. Molardi, T. Paixao, A. Beisenova, R. Min, P. Antunes, C. Marques, W. Blanc, D. Tosi, “Fiber Bragg Grating (FBG) Sensors in a High-Scattering Optical Fiber Doped with MgO Nanoparticles for Polarization-Dependent Temperature Sensing,” Applied Sciences, vol. 9, no. 15, 3107, 2019.

M. Jelbuldina, S. Korganbayev, Z. Seidagaliyeva, S. Sovetov, T. Tuganbekov, D. Tosi, “Fiber Bragg grating sensor for temperature monitoring during HIFU ablation of ex-vivobreast fibroadenoma,” IEEE Sensors Letters, vol. 3, no. 8, 2019.

S. Korganbayev, M. Shaimerdenova, T. Ayupova, M. Sypabekova, A. Bekmurzayeva, W. Blanc, C. Molardi, D. Tosi, “Refractive index sensor by interrogation of etched MgO nanoparticle-doped optical fiber signature,” Photonics Technology Letters, vol. 31, no. 15, pp. 1253-1256, 2019.

A. Beisenova, A. Issatayeva, I. Iordachita, W. Blanc, C. Molardi, D. Tosi, “Distributed fiber optics 3D shape sensing by means of high scattering NP-doped fibers simultaneous spatial multiplexing,” Optics Express, vol. 27, no. 16, pp. 22074-22087, 2019.

A. Beisenova, A. Issatayeva, S. Korganbayev, C. Molardi, W. Blanc, D. Tosi, “Simultaneous Distributed Sensing on Multiple MgO-doped High Scattering Fibers by Means of Scattering-level Multiplexing,” Journal of Lightwave Technology, vol. 37, no. 13, pp. 3413-3421, 2019.

A. Aitkulov, D. Tosi, “Design of an all-POF-fiber smartphone multi-channel breathing sensor with camera-division multiplexing,” IEEE Sensors Letters, vol. 3, no. 5, 2019.

K. Dukenbayev, I. Korolkov, D. Tishkevich, A. Kozlovskiy, S. Trukharov, Y. Gorin, E. Shumskaya, E. Kaniukov, D. Vinnik, M. Zdovorets, M. Anisovich, A. Trukhanov, D. Tosi, C. Molardi, “Fe3O4nanoparticles for complex targeted delivery and boron neutron capture therapy,” Nanomaterials, vol. 9, no. 4, 494, 2019.

A. Aitkulov, D. Tosi, “Optical fiber sensor based on plastic optical fiber and smartphone for measurement of the breathing rate,” IEEE Sensors Journal, vol. 19, no. 9, pp. 3282-3287, 2019.

A. Beisenova, A. Issatayeva, S. Sovetov, S. Korganbayev, M. Jelbuldina, Z. Ashikbayeva, W. Blanc, E. Schena, S. Sales, C. Molardi, D. Tosi, “Multi-fiber distributed thermal profiling of minimally invasive thermal ablation with scattering-level multiplexing in MgO-doped fibers,” Biomedical Optics Express, vol. 10, no. 3, pp. 1282-1296, 2019.

T. Ayupova, M. Sypabekova, C. Molardi, A. Bekmurzayeva, M. Shaimerdenova, K. Dukenbayev, D. Tosi, “Wavelet Based Demodulation of Multimode Etched Fiber Bragg Grating Refractive Index Sensor,” Sensors, vol. 19, no. 1, 39, 2019.

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